{bio}[foss/2023a] Boltz-1 v0.4.1 by pavelToman · Pull Request #22473 · easybuilders/easybuild-easyconfigs

pavelToman · 2025-03-06T10:29:56Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#518

pavelToman · 2025-03-06T10:31:06Z

@boegelbot please test @ jsc-zen3

pavelToman · 2025-03-06T10:39:53Z

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4202.shinx.os - Linux RHEL 9.4, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.18
See https://gist.github.com/pavelToman/1c2b94328dca4bead4486a6d81d4c984 for a full test report.

boegelbot · 2025-03-06T10:40:08Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22473 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22473 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5892

Test results coming soon (I hope)...

Details

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pavelToman · 2025-03-06T11:29:23Z

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4202.shinx.os - Linux RHEL 9.4, x86_64, AMD EPYC 9654 96-Core Processor, Python 3.9.18
See https://gist.github.com/pavelToman/5ec630d12e59b6eae6a3c1b3b348dd42 for a full test report.

pavelToman · 2025-03-06T11:40:34Z

Test report by @pavelToman
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node4006.donphan.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 570.86.15, Python 3.9.18
See https://gist.github.com/pavelToman/9e9f07f3871af703ec8f00c617da71bb for a full test report.

pavelToman · 2025-03-06T13:09:41Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-03-06T13:10:08Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22473 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22473 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5895

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-03-06T13:10:40Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 2 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/6d8f3b2466ac0ef293638f825948ae7f for a full test report.

pavelToman · 2025-03-06T13:50:47Z

Test report by @boegelbot FAILED Build succeeded for 0 out of 2 (1 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21 See https://gist.github.com/boegelbot/6d8f3b2466ac0ef293638f825948ae7f for a full test report.

PyTorch build failed

boegelbot · 2025-03-07T01:26:47Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 4 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/669808aa97d25673019e2e949ad08888 for a full test report.

pavelToman · 2025-03-07T09:12:42Z

Test report by @boegelbot FAILED Build succeeded for 0 out of 2 (1 easyconfigs in total) jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21 See https://gist.github.com/boegelbot/6d8f3b2466ac0ef293638f825948ae7f for a full test report.

Failed on the build of PyTorch

verdurin · 2025-03-07T18:04:22Z

Test report by @verdurin
SUCCESS
Build succeeded for 6 out of 6 (1 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/471102dc0f55b8763d3cd7d72aa95e3a for a full test report.

boegel · 2025-03-17T16:23:37Z

PyTorch/PyTorch-2.1.2-foss-2023a module is back on jsc-zen3 (reinstalled via --module-only), so trying again...

boegel · 2025-03-17T16:23:48Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-03-17T16:30:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22473 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22473 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5984

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-03-17T16:36:20Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/12eb43d0b75a2557a74872e38e1e7a24 for a full test report.

boegel · 2025-03-18T12:54:17Z

$HOME directory is filling up in test step for Boltz-1:

$ du -sh ~/.boltz
1.7G    /home/example/.boltz

@pavelToman Any idea if we can convince it to not use ~/.boltz, maybe by setting some environment variable?

pavelToman · 2025-03-18T13:38:14Z

$HOME directory is filling up in test step for Boltz-1:
$ du -sh ~/.boltz
1.7G    /home/example/.boltz
@pavelToman Any idea if we can convince it to not use ~/.boltz, maybe by setting some environment variable?

oh, mine ~/.boltz is 3.5G...
I think it comes from this code: cache = os.path.expanduser('~/.boltz')
I will try to export HOME to the builddir before tests run.

boegelbot · 2025-03-18T13:40:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22473 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22473 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5994

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-03-18T13:47:25Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/91b03b20d86998fa0e778df79b40da05 for a full test report.

boegel · 2025-03-18T14:24:12Z

Looks like redefining $HOME while running the tests is the only option, since ~ is hardcoded, see https://github.com/jwohlwend/boltz/blob/5f515995cfca71521dfac39d910a86cd4b5bb8e6/tests/test_regression.py#L28

boegel · 2025-03-18T14:25:48Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-03-18T14:30:09Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22473 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22473 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5995

Test results coming soon (I hope)...

Details

- notification for comment with ID 2733453152 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-03-18T14:35:11Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/90017bbb8d92b288592f6ecb3e001ab4 for a full test report.

…asyconfigs into 20250306112952_new_pr_Boltz-1041

boegel · 2025-03-19T11:20:21Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-03-19T11:20:22Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22473 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22473 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 6000

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-03-19T11:26:20Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/753c4ebbedd6d5a1d299e9d2d109be77 for a full test report.

boegel

lgtm

boegel · 2025-03-19T15:20:31Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3562.doduo.os - Linux RHEL 9.4, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.9.18
See https://gist.github.com/boegel/8b0d04949622ce9708d7f00f9fbf439f for a full test report.

boegel · 2025-03-19T15:40:54Z

Going in, thanks @pavelToman!

adding easyconfigs: Boltz-1-0.4.1-foss-2023a.eb

4689ab8

pavelToman added the new label Mar 6, 2025

pavelToman mentioned this pull request Mar 6, 2025

Boltz-1 vscentrum/vsc-software-stack#518

Closed

add hatchling as builddep

709c472

update runtest to not store caches

d9349e6

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

0c205fa

…asyconfigs into 20250306112952_new_pr_Boltz-1041

boegel added this to the release after 5.0.0 milestone Mar 19, 2025

boegel requested changes Mar 19, 2025

View reviewed changes

Comment thread easybuild/easyconfigs/b/Boltz-1/Boltz-1-0.4.1-foss-2023a.eb Outdated

Comment thread easybuild/easyconfigs/b/Boltz-1/Boltz-1-0.4.1-foss-2023a.eb Outdated

don't explicitly set use_pip and sanity_pip_check in Boltz-1 easyconfig

bba5e41

boegel approved these changes Mar 19, 2025

View reviewed changes

boegel merged commit 5989bc0 into easybuilders:develop Mar 19, 2025
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